welcome
When I using the Jcreator with biojava to create a protein sequenc and multiple sequence alignment it work well
but when I copy this code to netbean it not work and it gave me this exception:
Exception in thread "AWT-EventQueue-0" org.biojava3.core.exceptions.CompoundNotFoundError : Compound not found for: Cannot find compound for:
at org.biojava3.core.sequence.storage.ArrayListSequen ceReader.setContents(ArrayListSequenceReader.java: 201)
at org.biojava3.core.sequence.template.AbstractSequen ce.<init>(AbstractSequence.java:88)
at org.biojava3.core.sequence.ProteinSequence.<init>( ProteinSequence.java:52)
at main.jButton1ActionPerformed(main.java:191)
at main.access$000(main.java:29)
at main$1.actionPerformed(main.java:68)
at javax.swing.AbstractButton.fireActionPerformed(Abs tractButton.java:2018)
at javax.swing.AbstractButton$Handler.actionPerformed (AbstractButton.java:2341)
at javax.swing.DefaultButtonModel.fireActionPerformed (DefaultButtonModel.java:402)
at javax.swing.DefaultButtonModel.setPressed(DefaultB uttonModel.java:259)
at javax.swing.plaf.basic.BasicButtonListener.mouseRe leased(BasicButtonListener.java:252)
at java.awt.Component.processMouseEvent(Component.jav a:6505)
at javax.swing.JComponent.processMouseEvent(JComponen t.java:3321)
at java.awt.Component.processEvent(Component.java:627 0)
at java.awt.Container.processEvent(Container.java:222 9)
at java.awt.Component.dispatchEventImpl(Component.jav a:4861)
at java.awt.Container.dispatchEventImpl(Container.jav a:2287)
at java.awt.Component.dispatchEvent(Component.java:46 87)
at java.awt.LightweightDispatcher.retargetMouseEvent( Container.java:4832)
at java.awt.LightweightDispatcher.processMouseEvent(C ontainer.java:4492)
at java.awt.LightweightDispatcher.dispatchEvent(Conta iner.java:4422)
at java.awt.Container.dispatchEventImpl(Container.jav a:2273)
at java.awt.Window.dispatchEventImpl(Window.java:2719 )
at java.awt.Component.dispatchEvent(Component.java:46 87)
at java.awt.EventQueue.dispatchEventImpl(EventQueue.j ava:703)
at java.awt.EventQueue.access$000(EventQueue.java:102 )
at java.awt.EventQueue$3.run(EventQueue.java:662)
at java.awt.EventQueue$3.run(EventQueue.java:660)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.ProtectionDomain$1.doIntersectionPri vilege(ProtectionDomain.java:76)
at java.security.ProtectionDomain$1.doIntersectionPri vilege(ProtectionDomain.java:87)
at java.awt.EventQueue$4.run(EventQueue.java:676)
at java.awt.EventQueue$4.run(EventQueue.java:674)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.ProtectionDomain$1.doIntersectionPri vilege(ProtectionDomain.java:76)
at java.awt.EventQueue.dispatchEvent(EventQueue.java: 673)
at java.awt.EventDispatchThread.pumpOneEventForFilter s(EventDispatchThread.java:244)
at java.awt.EventDispatchThread.pumpEventsForFilter(E ventDispatchThread.java:163)
at java.awt.EventDispatchThread.pumpEventsForHierarch y(EventDispatchThread.java:151)
at java.awt.EventDispatchThread.pumpEvents(EventDispa tchThread.java:147)
at java.awt.EventDispatchThread.pumpEvents(EventDispa tchThread.java:139)
at java.awt.EventDispatchThread.run(EventDispatchThre ad.java:97)
for (int i=0;i<length;i++)
{seqs= new ProteinSequence (ar2);
System.out.println(seqs);}
this is my code ProteinSequence [] seqs= new ProteinSequence[length];
where the ar2 is array of strings
can any one help me , please???
Last edited by Haneen tar; Today at 06:07 PM.
